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RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis
http://hdl.handle.net/10091/00018783
http://hdl.handle.net/10091/0001878306db92ce-b9b7-4d1d-9f0d-1b5de897d50f
名前 / ファイル | ライセンス | アクション |
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RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf (1.6 MB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2016-04-22 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis | |||||
言語 | ||||||
言語 | eng | |||||
DOI | ||||||
識別子タイプ | DOI | |||||
関連識別子 | https://doi.org/10.1093/pcp/pcv071 | |||||
関連名称 | 10.1093/pcp/pcv071 | |||||
キーワード | ||||||
主題 | Arbuscular mycorrhiza, Lotus japonicus, Rhizophagus irregularis, Root nodule, Symbiosis, Transcriptome | |||||
資源タイプ | ||||||
資源 | http://purl.org/coar/resource_type/c_6501 | |||||
タイプ | journal article | |||||
著者 |
Handa, Yoshihiro
× Handa, Yoshihiro× Nishide, Hiroyo× Takeda, Naoya× Suzuki, Yutaka× Kawaguchi, Masayoshi× Saito, Katsuharu |
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信州大学研究者総覧へのリンク | ||||||
氏名 | Saito, Katsuharu | |||||
URL | http://soar-rd.shinshu-u.ac.jp/profile/ja.HCkpPUkh.html | |||||
出版者 | ||||||
出版者 | OXFORD UNIV PRESS | |||||
引用 | ||||||
内容記述タイプ | Other | |||||
内容記述 | PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015) | |||||
書誌情報 |
PLANT AND CELL PHYSIOLOGY 巻 56, 号 8, p. 1490-1511, 発行日 2015-08 |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | Gene expression during arbuscular mycorrhizal development is highly orchestrated in both plants and arbuscular mycorrhizal fungi. To elucidate the gene expression profiles of the symbiotic association, we performed a digital gene expression analysis of Lotus japonicus and Rhizophagus irregularis using a HiSeq 2000 next-generation sequencer with a Cufflinks assembly and de novo transcriptome assembly. There were 3,641 genes differentially expressed during arbuscular mycorrhizal development in L. japonicus, approximately 80% of which were up-regulated. The up-regulated genes included secreted proteins, transporters, proteins involved in lipid and amino acid metabolism, ribosomes and histones. We also detected many genes that were differentially expressed in small-secreted peptides and transcription factors, which may be involved in signal transduction or transcription regulation during symbiosis. Coregulated genes between arbuscular mycorrhizal and root nodule symbiosis were not particularly abundant, but transcripts encoding for membrane traffic-related proteins, transporters and iron transport-related proteins were found to be highly co-up-regulated. In transcripts of arbuscular mycorrhizal fungi, expansion of cytochrome P450 was observed, which may contribute to various metabolic pathways required to accommodate roots and soil. The comprehensive gene expression data of both plants and arbuscular mycorrhizal fungi provide a powerful platform for investigating the functional and molecular mechanisms underlying arbuscular mycorrhizal symbiosis. | |||||
資源タイプ(コンテンツの種類) | ||||||
内容記述タイプ | Other | |||||
内容記述 | Article | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 0032-0781 | |||||
書誌レコードID | ||||||
収録物識別子タイプ | NCID | |||||
収録物識別子 | AA0077511X | |||||
PubMed | ||||||
識別子タイプ | PMID | |||||
関連識別子 | https://pubmed.ncbi.nlm.nih.gov/26009592/ | |||||
関連名称 | 26009592 | |||||
権利 | ||||||
権利情報 | This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Plant and Cell Physiology following peer review. The definitive publisher-authenticated version PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015) is available online at: https://doi.org/10.1093/pcp/pcv071 . | |||||
出版タイプ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa | |||||
WoS | ||||||
表示名 | Web of Science | |||||
URL | http://gateway.isiknowledge.com/gateway/Gateway.cgi?&GWVersion=2&SrcAuth=ShinshuUniv&SrcApp=ShinshuUniv&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000359649400004 |