ログイン
言語:

WEKO3

  • トップ
  • ランキング
To
lat lon distance
To

Field does not validate



インデックスリンク

インデックスツリー

メールアドレスを入力してください。

WEKO

One fine body…

WEKO

One fine body…

アイテム

{"_buckets": {"deposit": "44c3b824-0521-42eb-b7f3-5cba8e7f28af"}, "_deposit": {"id": "18015", "owners": [], "pid": {"revision_id": 0, "type": "depid", "value": "18015"}, "status": "published"}, "_oai": {"id": "oai:soar-ir.repo.nii.ac.jp:00018015", "sets": ["1017"]}, "author_link": ["50367", "50368", "50369", "50370", "50371", "50372"], "item_1628147817048": {"attribute_name": "出版タイプ", "attribute_value_mlt": [{"subitem_version_resource": "http://purl.org/coar/version/c_ab4af688f83e57aa", "subitem_version_type": "AM"}]}, "item_6_biblio_info_6": {"attribute_name": "書誌情報", "attribute_value_mlt": [{"bibliographicIssueDates": {"bibliographicIssueDate": "2015-08", "bibliographicIssueDateType": "Issued"}, "bibliographicIssueNumber": "8", "bibliographicPageEnd": "1511", "bibliographicPageStart": "1490", "bibliographicVolumeNumber": "56", "bibliographic_titles": [{"bibliographic_title": "PLANT AND CELL PHYSIOLOGY"}]}]}, "item_6_description_20": {"attribute_name": "抄録", "attribute_value_mlt": [{"subitem_description": "Gene expression during arbuscular mycorrhizal development is highly orchestrated in both plants and arbuscular mycorrhizal fungi. To elucidate the gene expression profiles of the symbiotic association, we performed a digital gene expression analysis of Lotus japonicus and Rhizophagus irregularis using a HiSeq 2000 next-generation sequencer with a Cufflinks assembly and de novo transcriptome assembly. There were 3,641 genes differentially expressed during arbuscular mycorrhizal development in L. japonicus, approximately 80% of which were up-regulated. The up-regulated genes included secreted proteins, transporters, proteins involved in lipid and amino acid metabolism, ribosomes and histones. We also detected many genes that were differentially expressed in small-secreted peptides and transcription factors, which may be involved in signal transduction or transcription regulation during symbiosis. Coregulated genes between arbuscular mycorrhizal and root nodule symbiosis were not particularly abundant, but transcripts encoding for membrane traffic-related proteins, transporters and iron transport-related proteins were found to be highly co-up-regulated. In transcripts of arbuscular mycorrhizal fungi, expansion of cytochrome P450 was observed, which may contribute to various metabolic pathways required to accommodate roots and soil. The comprehensive gene expression data of both plants and arbuscular mycorrhizal fungi provide a powerful platform for investigating the functional and molecular mechanisms underlying arbuscular mycorrhizal symbiosis.", "subitem_description_type": "Abstract"}]}, "item_6_description_30": {"attribute_name": "資源タイプ(コンテンツの種類)", "attribute_value_mlt": [{"subitem_description": "Article", "subitem_description_type": "Other"}]}, "item_6_description_5": {"attribute_name": "引用", "attribute_value_mlt": [{"subitem_description": "PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015)", "subitem_description_type": "Other"}]}, "item_6_link_3": {"attribute_name": "信州大学研究者総覧へのリンク", "attribute_value_mlt": [{"subitem_link_text": "Saito, Katsuharu", "subitem_link_url": "http://soar-rd.shinshu-u.ac.jp/profile/ja.HCkpPUkh.html"}]}, "item_6_link_67": {"attribute_name": "WoS", "attribute_value_mlt": [{"subitem_link_text": "Web of Science", "subitem_link_url": "http://gateway.isiknowledge.com/gateway/Gateway.cgi?\u0026GWVersion=2\u0026SrcAuth=ShinshuUniv\u0026SrcApp=ShinshuUniv\u0026DestLinkType=FullRecord\u0026DestApp=WOS\u0026KeyUT=000359649400004"}]}, "item_6_publisher_4": {"attribute_name": "出版者", "attribute_value_mlt": [{"subitem_publisher": "OXFORD UNIV PRESS"}]}, "item_6_relation_47": {"attribute_name": "PubMed", "attribute_value_mlt": [{"subitem_relation_name": [{"subitem_relation_name_text": "26009592"}], "subitem_relation_type_id": {"subitem_relation_type_id_text": "https://pubmed.ncbi.nlm.nih.gov/26009592/", "subitem_relation_type_select": "PMID"}}]}, "item_6_relation_48": {"attribute_name": "DOI", "attribute_value_mlt": [{"subitem_relation_name": [{"subitem_relation_name_text": "10.1093/pcp/pcv071"}], "subitem_relation_type_id": {"subitem_relation_type_id_text": "https://doi.org/10.1093/pcp/pcv071", "subitem_relation_type_select": "DOI"}}]}, "item_6_rights_62": {"attribute_name": "権利", "attribute_value_mlt": [{"subitem_rights": "This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Plant and Cell Physiology following peer review. The definitive publisher-authenticated version PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015) is available online at: https://doi.org/10.1093/pcp/pcv071 ."}]}, "item_6_select_64": {"attribute_name": "著者版フラグ", "attribute_value_mlt": [{"subitem_select_item": "author"}]}, "item_6_source_id_35": {"attribute_name": "ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "0032-0781", "subitem_source_identifier_type": "ISSN"}]}, "item_6_source_id_39": {"attribute_name": "NII ISSN", "attribute_value_mlt": [{"subitem_source_identifier": "0032-0781", "subitem_source_identifier_type": "ISSN"}]}, "item_6_source_id_40": {"attribute_name": "書誌レコードID", "attribute_value_mlt": [{"subitem_source_identifier": "AA0077511X", "subitem_source_identifier_type": "NCID"}]}, "item_6_text_69": {"attribute_name": "wosonly authkey", "attribute_value_mlt": [{"subitem_text_value": "Arbuscular mycorrhiza; Lotus japonicus; Rhizophagus irregularis; Root nodule; Symbiosis; Transcriptome"}]}, "item_6_text_70": {"attribute_name": "wosonly keywords", "attribute_value_mlt": [{"subitem_text_value": "SYMBIOTIC NODULE DEVELOPMENT; MEDICAGO-TRUNCATULA ROOTS; DEPENDENT PROTEIN-KINASE; LIPID TRANSFER PROTEIN; PHOSPHATE TRANSPORTER; RECEPTOR KINASE; CLE GENES; INTRACELLULAR ACCOMMODATION; MEMBRANE BIOGENESIS; SIGNAL-TRANSDUCTION"}]}, "item_6_textarea_68": {"attribute_name": "wosonly abstract", "attribute_value_mlt": [{"subitem_textarea_value": "Gene expression during arbuscular mycorrhizal development is highly orchestrated in both plants and arbuscular mycorrhizal fungi. To elucidate the gene expression profiles of the symbiotic association, we performed a digital gene expression analysis of Lotus japonicus and Rhizophagus irregularis using a HiSeq 2000 next-generation sequencer with a Cufflinks assembly and de novo transcriptome assembly. There were 3,641 genes differentially expressed during arbuscular mycorrhizal development in L. japonicus, approximately 80% of which were up-regulated. The up-regulated genes included secreted proteins, transporters, proteins involved in lipid and amino acid metabolism, ribosomes and histones. We also detected many genes that were differentially expressed in small-secreted peptides and transcription factors, which may be involved in signal transduction or transcription regulation during symbiosis. Coregulated genes between arbuscular mycorrhizal and root nodule symbiosis were not particularly abundant, but transcripts encoding for membrane traffic-related proteins, transporters and iron transport-related proteins were found to be highly co-up-regulated. In transcripts of arbuscular mycorrhizal fungi, expansion of cytochrome P450 was observed, which may contribute to various metabolic pathways required to accommodate roots and soil. The comprehensive gene expression data of both plants and arbuscular mycorrhizal fungi provide a powerful platform for investigating the functional and molecular mechanisms underlying arbuscular mycorrhizal symbiosis."}]}, "item_creator": {"attribute_name": "著者", "attribute_type": "creator", "attribute_value_mlt": [{"creatorNames": [{"creatorName": "Handa,  Yoshihiro"}], "nameIdentifiers": [{"nameIdentifier": "50367", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Nishide,  Hiroyo"}], "nameIdentifiers": [{"nameIdentifier": "50368", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Takeda,  Naoya"}], "nameIdentifiers": [{"nameIdentifier": "50369", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Suzuki,  Yutaka"}], "nameIdentifiers": [{"nameIdentifier": "50370", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Kawaguchi,  Masayoshi"}], "nameIdentifiers": [{"nameIdentifier": "50371", "nameIdentifierScheme": "WEKO"}]}, {"creatorNames": [{"creatorName": "Saito,  Katsuharu"}], "nameIdentifiers": [{"nameIdentifier": "50372", "nameIdentifierScheme": "WEKO"}]}]}, "item_files": {"attribute_name": "ファイル情報", "attribute_type": "file", "attribute_value_mlt": [{"accessrole": "open_date", "date": [{"dateType": "Available", "dateValue": "2016-05-25"}], "displaytype": "detail", "download_preview_message": "", "file_order": 0, "filename": "RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf", "filesize": [{"value": "1.6 MB"}], "format": "application/pdf", "future_date_message": "", "is_thumbnail": false, "licensetype": "license_note", "mimetype": "application/pdf", "size": 1600000.0, "url": {"label": "RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf", "url": "https://soar-ir.repo.nii.ac.jp/record/18015/files/RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf"}, "version_id": "6cc7e5da-ce91-4dde-b071-768ce4747c8e"}]}, "item_keyword": {"attribute_name": "キーワード", "attribute_value_mlt": [{"subitem_subject": "Arbuscular mycorrhiza", "subitem_subject_scheme": "Other"}, {"subitem_subject": "Lotus japonicus", "subitem_subject_scheme": "Other"}, {"subitem_subject": "Rhizophagus irregularis", "subitem_subject_scheme": "Other"}, {"subitem_subject": "Root nodule", "subitem_subject_scheme": "Other"}, {"subitem_subject": "Symbiosis", "subitem_subject_scheme": "Other"}, {"subitem_subject": "Transcriptome", "subitem_subject_scheme": "Other"}]}, "item_language": {"attribute_name": "言語", "attribute_value_mlt": [{"subitem_language": "eng"}]}, "item_resource_type": {"attribute_name": "資源タイプ", "attribute_value_mlt": [{"resourcetype": "journal article", "resourceuri": "http://purl.org/coar/resource_type/c_6501"}]}, "item_title": "RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis", "item_titles": {"attribute_name": "タイトル", "attribute_value_mlt": [{"subitem_title": "RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis", "subitem_title_language": "en"}]}, "item_type_id": "6", "owner": "1", "path": ["1017"], "permalink_uri": "http://hdl.handle.net/10091/00018783", "pubdate": {"attribute_name": "PubDate", "attribute_value": "2016-04-22"}, "publish_date": "2016-04-22", "publish_status": "0", "recid": "18015", "relation": {}, "relation_version_is_last": true, "title": ["RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis"], "weko_shared_id": -1}
  1. 070 農学部, 大学院農学研究科
  2. 0701 学術論文

RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis

http://hdl.handle.net/10091/00018783
http://hdl.handle.net/10091/00018783
06db92ce-b9b7-4d1d-9f0d-1b5de897d50f
名前 / ファイル ライセンス アクション
RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf RNA-seq_Transcriptional_Profiling_Arbuscular_Mycorrhiza.pdf (1.6 MB)
Item type 学術雑誌論文 / Journal Article(1)
公開日 2016-04-22
タイトル
言語 en
タイトル RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis
言語
言語 eng
キーワード
主題Scheme Other
主題 Arbuscular mycorrhiza
キーワード
主題Scheme Other
主題 Lotus japonicus
キーワード
主題Scheme Other
主題 Rhizophagus irregularis
キーワード
主題Scheme Other
主題 Root nodule
キーワード
主題Scheme Other
主題 Symbiosis
キーワード
主題Scheme Other
主題 Transcriptome
資源タイプ
資源 http://purl.org/coar/resource_type/c_6501
タイプ journal article
著者 Handa, Yoshihiro

× Handa, Yoshihiro

WEKO 50367

Handa, Yoshihiro

Search repository
Nishide, Hiroyo

× Nishide, Hiroyo

WEKO 50368

Nishide, Hiroyo

Search repository
Takeda, Naoya

× Takeda, Naoya

WEKO 50369

Takeda, Naoya

Search repository
Suzuki, Yutaka

× Suzuki, Yutaka

WEKO 50370

Suzuki, Yutaka

Search repository
Kawaguchi, Masayoshi

× Kawaguchi, Masayoshi

WEKO 50371

Kawaguchi, Masayoshi

Search repository
Saito, Katsuharu

× Saito, Katsuharu

WEKO 50372

Saito, Katsuharu

Search repository
信州大学研究者総覧へのリンク
氏名 Saito, Katsuharu
URL http://soar-rd.shinshu-u.ac.jp/profile/ja.HCkpPUkh.html
出版者
出版者 OXFORD UNIV PRESS
引用
内容記述タイプ Other
内容記述 PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015)
書誌情報 PLANT AND CELL PHYSIOLOGY

巻 56, 号 8, p. 1490-1511, 発行日 2015-08
抄録
内容記述タイプ Abstract
内容記述 Gene expression during arbuscular mycorrhizal development is highly orchestrated in both plants and arbuscular mycorrhizal fungi. To elucidate the gene expression profiles of the symbiotic association, we performed a digital gene expression analysis of Lotus japonicus and Rhizophagus irregularis using a HiSeq 2000 next-generation sequencer with a Cufflinks assembly and de novo transcriptome assembly. There were 3,641 genes differentially expressed during arbuscular mycorrhizal development in L. japonicus, approximately 80% of which were up-regulated. The up-regulated genes included secreted proteins, transporters, proteins involved in lipid and amino acid metabolism, ribosomes and histones. We also detected many genes that were differentially expressed in small-secreted peptides and transcription factors, which may be involved in signal transduction or transcription regulation during symbiosis. Coregulated genes between arbuscular mycorrhizal and root nodule symbiosis were not particularly abundant, but transcripts encoding for membrane traffic-related proteins, transporters and iron transport-related proteins were found to be highly co-up-regulated. In transcripts of arbuscular mycorrhizal fungi, expansion of cytochrome P450 was observed, which may contribute to various metabolic pathways required to accommodate roots and soil. The comprehensive gene expression data of both plants and arbuscular mycorrhizal fungi provide a powerful platform for investigating the functional and molecular mechanisms underlying arbuscular mycorrhizal symbiosis.
資源タイプ(コンテンツの種類)
内容記述タイプ Other
内容記述 Article
ISSN
収録物識別子タイプ ISSN
収録物識別子 0032-0781
書誌レコードID
収録物識別子タイプ NCID
収録物識別子 AA0077511X
PubMed
識別子タイプ PMID
関連識別子 https://pubmed.ncbi.nlm.nih.gov/26009592/
関連名称 26009592
DOI
識別子タイプ DOI
関連識別子 https://doi.org/10.1093/pcp/pcv071
関連名称 10.1093/pcp/pcv071
権利
権利情報 This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Plant and Cell Physiology following peer review. The definitive publisher-authenticated version PLANT AND CELL PHYSIOLOGY. 56(8):1490-1511 (2015) is available online at: https://doi.org/10.1093/pcp/pcv071 .
出版タイプ
出版タイプ AM
出版タイプResource http://purl.org/coar/version/c_ab4af688f83e57aa
WoS
表示名 Web of Science
URL http://gateway.isiknowledge.com/gateway/Gateway.cgi?&GWVersion=2&SrcAuth=ShinshuUniv&SrcApp=ShinshuUniv&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000359649400004
戻る
0
views
See details
Views

Versions

Ver.1 2021-03-01 09:23:47.966622
Show All versions

Share

Mendeley Twitter Facebook Print Addthis

Cite as

エクスポート

OAI-PMH
  • OAI-PMH JPCOAR
  • OAI-PMH DublinCore
  • OAI-PMH DDI
Other Formats
  • JSON
  • BIBTEX

Confirm


Powered by WEKO3


Powered by WEKO3